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Cleary’s expertise lies in the fields of health care quality, access, and evaluation, and health services. His research includes developing better methods for using patient reports about their care and health status to evaluate the quality of medical care, and studying the relationships between clinician and organizational characteristics and the quality of medical care, in particular for persons with AIDS. Cleary is Principal Investigator and Director of the Yale Center for Interdisciplinary Research on AIDS, and serves as Chair of the National Advisory Committee for The Robert Wood Johnson Foundation Investigator Awards in Health Policy Research. He is an elected member of the Institute of Medicine and of the Connecticut Academy for Science and Engineering.